{"id":568,"date":"2018-11-29T14:47:13","date_gmt":"2018-11-29T12:47:13","guid":{"rendered":"http:\/\/vaquerizaslab.org\/dev22\/?page_id=568"},"modified":"2020-12-02T13:30:25","modified_gmt":"2020-12-02T11:30:25","slug":"resources","status":"publish","type":"page","link":"https:\/\/vaquerizaslab.org\/dev22\/resources\/","title":{"rendered":"Resources"},"content":{"rendered":"<p>Find below&nbsp;a list of software and other resources that we have developed. Please click on the appropriate links to access the software.<\/p>\n<p><strong>CHESS: Quantitative comparison and automatic feature extraction of chromatin contact data<\/strong><br \/>\n<a href=\"https:\/\/github.com\/vaquerizaslab\/chess\" target=\"_blank\" rel=\"noopener noreferrer\">GitHub<\/a> | <a href=\"https:\/\/www.nature.com\/articles\/s41588-020-00712-y\">Publication<\/a> | <a href=\"https:\/\/chess-hic.readthedocs.io\/en\/latest\/index.html\" target=\"_blank\" rel=\"noopener noreferrer\">Documentation<\/a><\/p>\n<p><strong>FAN-C: A feature-rich framework for the analysis and visualisation of chromatin contact data<\/strong><br \/>\n<a href=\"https:\/\/github.com\/vaquerizaslab\/fanc\" target=\"_blank\" rel=\"noopener noreferrer\">GitHub<\/a> | <a href=\"https:\/\/www.biorxiv.org\/content\/10.1101\/2020.02.03.932517v1\" target=\"_blank\" rel=\"noopener noreferrer\">Publication<\/a> | <a href=\"https:\/\/fan-c.readthedocs.io\/en\/latest\/\" target=\"_blank\" rel=\"noopener noreferrer\">Documentation<\/a><\/p>\n<p><strong>Low-C: A low input Hi-C method<\/strong><br \/>\n<a href=\"https:\/\/vaquerizaslab.org\/dev22\/wp-content\/uploads\/2018\/11\/Diaz-Kruse-Vaquerizas_Lab-Low-C_Supplementary_Data1_v20181119.xlsx\">Detailed Method<\/a> | <a href=\"https:\/\/www.nature.com\/articles\/s41467-018-06961-0\" target=\"_blank\" rel=\"noopener noreferrer\">Publication<\/a><\/p>\n<p><strong>TADTool<\/strong><br \/>\n<a href=\"https:\/\/github.com\/vaquerizaslab\/tadtool\" target=\"_blank\" rel=\"noopener noreferrer\">GitHub<\/a> | <a href=\"http:\/\/bioinformatics.oxfordjournals.org\/content\/early\/2016\/06\/16\/bioinformatics.btw368.abstract\" target=\"_blank\" rel=\"noopener noreferrer\">Publication<\/a><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Find below&nbsp;a list of software and other resources that we have developed. Please click on the appropriate links to access the software. CHESS: Quantitative comparison and automatic feature extraction of chromatin contact data GitHub | Publication | Documentation FAN-C: A feature-rich framework for the analysis and visualisation of chromatin contact data GitHub | Publication | [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"ngg_post_thumbnail":0,"footnotes":""},"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v15.4 - https:\/\/yoast.com\/wordpress\/plugins\/seo\/ -->\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/vaquerizaslab.org\/dev22\/resources\/\" \/>\n<meta property=\"og:locale\" content=\"en_GB\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Resources - Vaquerizas Lab\" \/>\n<meta property=\"og:description\" content=\"Find below&nbsp;a list of software and other resources that we have developed. Please click on the appropriate links to access the software. CHESS: Quantitative comparison and automatic feature extraction of chromatin contact data GitHub | Publication | Documentation FAN-C: A feature-rich framework for the analysis and visualisation of chromatin contact data GitHub | Publication | [&hellip;]\" \/>\n<meta property=\"og:url\" content=\"https:\/\/vaquerizaslab.org\/dev22\/resources\/\" \/>\n<meta property=\"og:site_name\" content=\"Vaquerizas Lab\" \/>\n<meta property=\"article:modified_time\" content=\"2020-12-02T11:30:25+00:00\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:creator\" content=\"@vaquerizas_lab\" \/>\n<meta name=\"twitter:site\" content=\"@vaquerizas_lab\" \/>\n<meta name=\"twitter:label1\" content=\"Written by\">\n\t<meta name=\"twitter:data1\" content=\"admin\">\n\t<meta name=\"twitter:label2\" content=\"Estimated reading time\">\n\t<meta name=\"twitter:data2\" content=\"0 minutes\">\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\/\/schema.org\",\"@graph\":[{\"@type\":\"Organization\",\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#organization\",\"name\":\"Vaquerizas Laboratory\",\"url\":\"https:\/\/vaquerizaslab.org\/dev22\/\",\"sameAs\":[\"https:\/\/www.linkedin.com\/in\/vaquerizasjm\/\",\"https:\/\/twitter.com\/vaquerizas_lab\"],\"logo\":{\"@type\":\"ImageObject\",\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#logo\",\"inLanguage\":\"en-GB\",\"url\":\"https:\/\/vaquerizaslab.org\/dev22\/wp-content\/uploads\/2020\/06\/vaquerizaslab_sqsq.png\",\"width\":1316,\"height\":1321,\"caption\":\"Vaquerizas Laboratory\"},\"image\":{\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#logo\"}},{\"@type\":\"WebSite\",\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#website\",\"url\":\"https:\/\/vaquerizaslab.org\/dev22\/\",\"name\":\"Vaquerizas Lab\",\"description\":\"Developmental Epigenomics group @ MRC London Institute of Medical Sciences | Imperial College London\",\"publisher\":{\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#organization\"},\"potentialAction\":[{\"@type\":\"SearchAction\",\"target\":\"https:\/\/vaquerizaslab.org\/dev22\/?s={search_term_string}\",\"query-input\":\"required name=search_term_string\"}],\"inLanguage\":\"en-GB\"},{\"@type\":\"WebPage\",\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/resources\/#webpage\",\"url\":\"https:\/\/vaquerizaslab.org\/dev22\/resources\/\",\"name\":\"Resources - Vaquerizas Lab\",\"isPartOf\":{\"@id\":\"https:\/\/vaquerizaslab.org\/dev22\/#website\"},\"datePublished\":\"2018-11-29T12:47:13+00:00\",\"dateModified\":\"2020-12-02T11:30:25+00:00\",\"inLanguage\":\"en-GB\",\"potentialAction\":[{\"@type\":\"ReadAction\",\"target\":[\"https:\/\/vaquerizaslab.org\/dev22\/resources\/\"]}]}]}<\/script>\n<!-- \/ Yoast SEO plugin. -->","_links":{"self":[{"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/pages\/568"}],"collection":[{"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/comments?post=568"}],"version-history":[{"count":5,"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/pages\/568\/revisions"}],"predecessor-version":[{"id":771,"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/pages\/568\/revisions\/771"}],"wp:attachment":[{"href":"https:\/\/vaquerizaslab.org\/dev22\/wp-json\/wp\/v2\/media?parent=568"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}